帮助 关于我们

返回检索结果

植物DNA条形码与生物多样性数据共享平台构建
Plant DNA barcoding and framework for biodiversity data sharing platform

查看参考文献40篇

曾春霞 1   王亚楠 2   王雨华 3 *   王红 4 *  
文摘 DNA条形码基于较短的DNA序列实现物种的快速、准确鉴定,不仅加快了全球生物物种的鉴定和分类步伐,也为生物多样性的管理、保护和可持续利用提供了新思路和研究方法。植物DNA条形码标准数据库的不断完善,将使植物多样性信息的快速获取成为可能;将不同类型数据资源整合、共享和利用,构建植物DNA条形码数据共享平台,是满足公众对物种准确鉴定和快速认知的重要支撑。本文介绍了近年来植物DNA条形码的研究进展;植物DNA条形码参考数据库的研发现状和存在的问题。结合上述问题,围绕“大数据”时代背景,对如何管理和使用好海量的植物信息,如何构建数据共享平台提出了一些设想:(1)数据共享平台的元数据应尽可能翔实、丰富、准确和多关联;(2)数据标准应统一规范;(3)查询入口方便、迅速、多样,易于管理,便于实现更大程度的数据共享和全球化的合作交流。
其他语种文摘 DNA barcoding technology provides an opportunity for rapid, accurate, and standardized species-level identification using short DNA sequences. This method speeds up species identification and classification, and presents a new tool for the management, conservation and sustainable development of biodiversity at a global level. Due to improvements in plant barcode database availability and functionality, it is becoming feasible to meet increasing demands for biodiversity information. A framework is needed for a bar-coding server platform that utilizes, integrates, and shares among different data types. Such a platform would be an important step towards enabling the public to rapidly identify species and acquire species-related digital information. In this paper, we review current progress on plant DNA barcoding. Secondly, we summarize the current status of, and identify bottlenecks for, plant DNA barcode reference libraries specifically. Thirdly, in the Big Data era, it is indispensable to manage and make good use of massive amounts of plant information. We provide the following suggestions for the framework of server platform: (1) metadata should be substantial, accurate and. correlative; (2) data should be normalized; (3) query entrance is convenient, efficient, easy to manage, and available for large-scale data sharing and global communication.
来源 生物多样性 ,2014,22(3):285-292 【核心库】
关键词 植物DNA条形码 ; iFlora ; 生物多样性 ; 共享平台
地址

1. 中国科学院昆明植物研究所中国西南野生生物种质资源库, 昆明, 650201  

2. 中国科学院昆明植物研究所科技信息中心, 昆明, 650201  

3. 中国科学院昆明植物研究所科技信息中心, 中国科学院资源植物与生物技术重点实验室, 昆明, 650201  

4. 中国科学院昆明植物研究所中国西南野生生物种质资源库, 中国科学院生物多样性与生物地理学重点实验室, 昆明, 650201

语种 中文
文献类型 研究性论文
ISSN 1005-0094
基金 科技部科技基础性工作专项项目 ;  科技部国家高技术研究发展计划(863计划)主题项目 ;  中国科学院大科学装置项目
文献收藏号 CSCD:5152316

参考文献 共 40 共2页

1.  Agnarsson I. Taxonomy in a changing world: seeking solutions for a science in crisis. Systemaiic Biology,2007,56:531-539 被引 14    
2.  Bourlat S J. Feeding ecology of Xenoturbella bocki (phylum Xenoturbellida) revealed by genetic barcoding. Molecular Ecology Resources,2008,8:18-22 被引 5    
3.  Cbol Plant Working Group. A DNA barcode for land plants. Proceedings of the National Academy of Sciences, USA,2009,106:12794-12797 被引 215    
4.  Chase M W. Barcoding of plants and fungi. Science,2009,325:682-683 被引 25    
5.  陈之端. 生命条形码与生命之树. 植物类与资源学报,2013,35:675-681 被引 7    
6.  DeSalle R. The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philosophical Transactions of the Royal Society of London: Series B: Biological Sciences,2005,360:1905-1916 被引 34    
7.  高连明. 关于植物DNA条形码研究技术规范. 植物分类与资源学报,2012,34:592-606 被引 39    
8.  Garcia-Robledo C. Tropical plant-herbivore networks: reconstructing species interactions using DNA barcodes. PLoS ONE,2013,8:e52967 被引 17    
9.  Hajibabaei M. DNA barcodes distinguish species of tropical Lepodoptera. Proceedings of the National Academy of Sciences, USA,2006,103:968-971 被引 135    
10.  Hajibabaei M. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics,2007,23:167-172 被引 64    
11.  Hebert P D N. Biological identifications through DNA barcodes. Proceedings of the Royal Society of London: Series B,2003,270:313-321 被引 901    
12.  Hebert P D N. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences, USA,2004,101:14812-14817 被引 204    
13.  Hiiesalu I. Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing. Molecular Ecology,2012,21:2004-2016 被引 6    
14.  Hollingsworth P M. Refining the DNA barcode for land plants. Proceedings of the National Academy of Sciences, USA,2011,180:19451-19452 被引 39    
15.  Hollingsworth P M. Choosing and using a plant DNA Barcode. PLoS ONE,2011,6:e19254 被引 80    
16.  Huler J. Host specificity of ambrosia and bark beetles (Col., Curculionidae: Scolytinae and Platypodinae) in a New Guinea rain forest. Ecological Entomology,2007,32:762-772 被引 5    
17.  Jorgensen T. Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding. Molecular Ecology,2012,21:1980-1988 被引 7    
18.  Kress W J. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE,2007,2:e508 被引 175    
19.  Kress W J. Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proceedings of the National Academy of Sciences, USA,2009,106:18621-18626 被引 69    
20.  Li D Z. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences, USA,2011,108:19641-19646 被引 95    
引证文献 2

1 裴男才 融合遗传、形态和环境信息的植物智能识别 世界林业研究,2016,29(6):29-32
被引 0 次

2 吴铠 湖泊沉积植物古DNA的现代过程 植物生态学报,2022,46(7):735-752
被引 3

显示所有2篇文献

论文科学数据集
PlumX Metrics
相关文献

 作者相关
 关键词相关
 参考文献相关

版权所有 ©2008 中国科学院文献情报中心 制作维护:中国科学院文献情报中心
地址:北京中关村北四环西路33号 邮政编码:100190 联系电话:(010)82627496 E-mail:cscd@mail.las.ac.cn 京ICP备05002861号-4 | 京公网安备11010802043238号