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叶绿体系统发育基因组学的研究进展
Advances in Phylogenomics Based on Complete Chloroplast Genomes

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文摘 系统发育基因组学是由系统发育研究和基因组学相结合产生的一门崭新的交叉学科。近年来,在植物系统发育研究中,基于叶绿体基因组的系统发育基因组学研究优势渐显端倪,为一些分类困难类群的系统学问题提出了解决方案,但同时也存在某些问题。本文结合近年来叶绿体系统发育基因组学研究中的一些典型实例,讨论了叶绿体系统发育基因组学在植物系统关系重建中的价值和应用前景,并针对其存在问题进行了探讨,其中也涉及了新一代测序技术对叶绿体系统发育基因组学的影响。
其他语种文摘 Phylogenomics is a new synthesized discipline which combines genomics with phylogenetics.Phylogenomics based on chloroplast genomes has shown many great advantages in plant phylogenetic research in recent years,providing resolutions for phylogeny of some taxonomically difficult groups of plants.However,there are some problems coming along with chloroplast phylogenomics as well.In this review,the application prospects and potential problems of chloroplast phylogenomics in plant phylogenetic reconstruction were discussed based on recent phylogenomic case studies.The influence of next-generation sequencing on chloroplast phylogenomics was also discussed.
来源 植物分类与资源学报 ,2011,33(4):365-375 【核心库】
关键词 系统发育基因组学 ; 叶绿体基因组 ; 新一代测序技术 ; 长枝吸引
地址

中国科学院昆明植物研究所, 生物多样性与生物地理学重点实验室, 云南, 昆明, 650201

语种 中文
文献类型 研究性论文
ISSN 2095-0845
学科 分子生物学;植物学
基金 中国科学院现代农业科技创新基地重要方向性项目“重要野生禾本科植物的比较基因组学和重要功能基因的研究
文献收藏号 CSCD:4275005

参考文献 共 86 共5页

1.  Adachi J. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. Journal of Molecular Evolution,2000,50(4):348-358 被引 4    
2.  Aguinaldo AMA. Evidence for a clade of nematodes,arthropods and other moulting animals. Nature,1997,387(6632):489-493 被引 18    
3.  Barkman TJ. Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny. Proceedings of the National Academy of Sciences,2000,97(24):13166-13171 被引 14    
4.  Bergsten J. A review of long-branch attraction. Cladistics,2005,21(2):163-193 被引 21    
5.  Bowe LM. Phylogeny of seed plants based on all three genomic compartmer ts:extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proceedings of the National Academy of Sciences of the United States of America,2000,97(8):4092-4097 被引 21    
6.  Brinkmann H. Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies. Molecular Biology and Evolution,1999,16(6):817-825 被引 6    
7.  Burleigh JG. Inferring phylogenies with incomplete data sets:a 5-gene,567-taxon analysis of angiosperms. BMC Evolutionary Biology,2009,9(1):61 被引 6    
8.  Cai Z. Extensive reorganization of the plastid genome of Trifolium subterraneum(Fabaceae)is associated with numerous repeated sequences and novel DNA insertions. Journal of Molecular Evolution,2008,67(6):696-704 被引 9    
9.  Chase MW. Phylogenetics of seed plants:an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden,1993,80(3):528-580 被引 90    
10.  Chaw SM. Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. Journal of Molecular Evolution,2004,58(4):424-441 被引 12    
11.  Chaw SM. Seed plant phylogeny inferred from all three plant genomes:monophyly of extant gymnosperms and origin of Gnetales from conifers. Proceedings of the National Academy of Sciences of the United States of America,2000,97(8):4086-4091 被引 22    
12.  Chaw SM. Molecular phylogeny of extant gymnosperms and seed plant evolution:analysis of nuclear 18S rRNA sequences. Molecular Biology and Evolution,1997,14(1):56-68 被引 20    
13.  Chu K H. Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes. Molecular Biology and Evolution,2004,21(1):200-206 被引 9    
14.  Clegg MT. Rates and patterns of chloroplast DNA evolution. Proceedings of the National Academy of Sciences of the United States of America,1994,91(15):6795-6801 被引 42    
15.  Corriveau JL. Rapid screening method to detect potential biparental inheritance of plastid DNA and results for over 200 angiosperm species. American Journal of Botany,1988,75(10):1443-1458 被引 29    
16.  Cosner ME. An empirical comparison of phylogenetic methods on chloroplast gene order data in Campanulaceae. Comparative Cenomics:Empirical and Analytical Approaches to Gene Order Dynamics,Map Alignment,and the Evolution of Gene Families,2000:99-121 被引 1    
17.  Cosner ME. The highly rearranged chloroplast genome of Trachelium caeruleum(Campanulaceae):multiple inversions,inverted repeat expansion and contraction,transposition,insertions/deletions,and several repeat families. Current Genetics,1997,31(5):419-429 被引 6    
18.  Cosner ME. Chloroplast DNA rearrangements in Campanulaceae:phylogenetic utility of highly rearranged genomes. BMC Evolutionary Biology,2004,4(1):27 被引 10    
19.  Cronn R. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Research,2008,36(19):e122 被引 18    
20.  Delsuc F. Phylogenomics and the reconstruction of the tree of life. Nature Reviews Genetics,2005,6(5):361-375 被引 47    
引证文献 38

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