四个DNA片段在山茶属分子系统学研究中的应用
The Application of Four DNA Sequences to Studying Molecular Phylogeny of Camellia （Theaceae）
查看参考文献38篇
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文摘
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选取山茶属14个组中的10组21种植物对目前常用于属内种间的4个DNA片段（ITS、waxy、trnL-F、rpL16）进行序列测定。结果表明：（1）来自叶绿体基因组的2个片段（trnL-F、rpL16）其PCR扩增和测序都很容易，但两者的进化速率都非常慢，序列矩阵只有很少信息位点（trnL-F含9个，rpL16为20个），不能提供必要的系统发育信息。（2）来自核基因组的ITS片段其PCR产物比较容易获得，但其序列的测定存在较多问题。（3）waxy是来自核基因组的另一个片段，其PCR扩增因受模板DNA的数量和质量的影响很大而有一定难度，但其进化速率较快，序列矩阵具有较多信息位点（92个），并且在山茶属是单拷贝，这对于解决山茶属这类具有许多近缘物种的类群的系统关系有重要价值。基于tsnL-F、rpL16和waxy三组数据所建分子系统树支持山茶属为一单系，但属下系统由于取样等原因有待进一步研究。 |
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其他语种文摘
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Four DNA sequences-ITS, waxy, trnL-F, and rpL16 have been used to resolve the inter-species relationships of twenty-one species representing 10 out of the 14 sections in Camellia. The results indicated that： （1） PCR amplification and sequencing were easy for trnL-F and rpL16 sequences, however, the divergence rates of the two chloroplast sequences are too slow with few phylogenetically informative sites in data matrixes （9 sites in trnL-F and 20 sites in rpL16）, so they could not provide enough phylogenetic information; （2） The PCR products of ITS were easily obtained, but there were still many problems in sequencing; （3） The waxy gene, another sequence from the nuclear genome, has significant values in resolving the infrageneric relationships in Camellia. The divergence rate is faster than aforementioned sequences. There were more informative sites （92） in data matrix though PCR amplification was difficult because it is affected by quantity and quality of template DNA and it is a single copy gene in Camellia. The present study indicated that the waxy gene had great potential values in the systematic study of Camellia while other three sequences are unfitted to resolve the problem. The results of our DNA analysis of three segments support that the genus Camellia is a monophyletic group, but the inter-species relationships is still needed more study. |
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来源
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云南植物研究
,2006,28(2):108-114 【核心库】
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关键词
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山茶属
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DNA序列
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进化速率
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分子系统学
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地址
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中国科学院昆明植物研究所, 中国科学院生物多样性与生物地理学重点实验室, 云南, 昆明, 650204
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语种
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中文 |
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文献类型
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研究性论文 |
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ISSN
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0253-2700 |
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学科
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植物学 |
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基金
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国家科技基础条件平台建设项目
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云南省科学技术突出贡献奖资助项目
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文献收藏号
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CSCD:2340960
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